I need a python expert with knowledge in medical imaging and segmentation to develop a code to segment the blood vessels and bones out of MR angiography images.
The code has to go over each slice and by looking each pixel assign a tag to it: Bone, Blood vessel, brain tissue.
simple thresholding doesnt work. I need something more advanced. Looking for ideas here.
Important Note: has to be in Python and VTK.
You should have medical imaging segmentation experience to be considered for this project.
As an additional description,
This is gonna be an online tool where user upload their data (already designed and working) and then your code will be applied to the data as a filter.
The back end code is in Python and Django, and the visualization is through vtk.js
After the user selects the segmentation filter, the code is supposed to do the initial segmentation and show the results as three labels, bone, brain tissue and blood vessel. After that user should be able to correct the segmentation. The method cannot be simple thresholding. I am looking for something more advances.