JWPlayer install and make site iPad / iPhone compatible

We need to install the JWplayer on a site that is based on the ClipHouse ([login to view URL]) content management system. The new player is HTML5 compliant and we need our site to default to this player when someone is an iPad or iPhone. The site needs to operate just like it currently does on all other browsers when a user is on the iPad or iPhone. Also, we need to make some adjustments to the way the site is encoding videos to incorporate the new iPad / iPhone version along with creating an HD Flash version and making tweaks to the general settings to improve video quality.